Publications

Ryan GE; Farley EK, 2020. Functional genomic approaches to elucidate the role of enhancers during development.  Wiley Interdiscip Rev Syst Biol Med 12(2):e1467

Zhang W; Bojorquez-Gomez A; Velez DO; Xu G; Sanchez KS; Shen JP; Chen K; Licon K; Melton C; Olson KM; Yu MK; Huang JK; Carter H; Farley EK; Snyder M; Fraley SI; Kreisberg JF; Ideker T, 2018. A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.  Nat Genet 50(4):613-620

D Antonio M; Weghorn D; D Antonio-Chronowska A; Coulet F; Olson KM; DeBoever C; Drees F; Arias A; Alakus H; Richardson AL; Schwab RB; Farley EK; Sunyaev SR; Frazer KA, 2017. Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer.  Nat Commun 8(1):436

DeBoever C; Li H; Jakubosky D; Benaglio P; Reyna J; Olson KM; Huang H; Biggs W; Sandoval E; D'Antonio M; Jepsen K; Matsui H; Arias A; Ren B; Nariai N; Smith EN; D'Antonio-Chronowska A; Farley EK; Frazer KA, 2017. Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.  Cell Stem Cell 20(4):533-546.e7

Farley EK; Olson KM; Zhang W; Rokhsar DS; Levine MS, 2016. Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers.  Proc Natl Acad Sci U S A 113(23):6508-13

Farley EK; Olson KM; Zhang W; Brandt AJ; Rokhsar DS; Levine MS, 2015. Suboptimization of developmental enhancers.  Science 350(6258):325-8

Farley EK; Olson KM; Levine MS, 2015. Regulatory Principles Governing Tissue Specificity of Developmental Enhancers.  Cold Spring Harb Symp Quant Biol 80:27-32

Farley EK, 2013. Gene transfer in developing chick embryos: in ovo electroporation.  Methods Mol Biol 1018:141-50

Farley E; Levine M, 2012. HOT DNAs: a novel class of developmental enhancers.  Genes Dev 26(9):873-6

Gennet N; Gale E; Nan X; Farley E; Takacs K; Oberwallner B; Chambers D; Li M, 2011. Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate.  Proc Natl Acad Sci U S A 108(22):9131-6

Farley EK; Gale E; Chambers D; Li M, 2011. Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis.  Neural Dev 6:17

Publication list retrieved from NCBI using ImpactPubs

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